HsaEX6018785 @ hg19
Exon Skipping
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4, anion exchanger, member 3 [Source:HGNC Symbol;Acc:11029]
Coordinates
chr2:220492049-220493292:+
Coord C1 exon
chr2:220492049-220492467
Coord A exon
chr2:220492622-220492765
Coord C2 exon
chr2:220493127-220493292
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACCCCGCCCTCCTCCCCCAGGGC
3' ss Score
12.55
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GGGGAGGGGAGGCTAAAAGCAGGGTTGGGGAGCGAATCTGGGGGATTGTGGGAATATCGGGCCGCGCCCCAGCCCCCAGCGATGCGTGGGGCGCCTGGAGAAGGGGCGCACGGGCAGGTGGGGTGCTGCGGGGCCCGCGCGTGGGGGCCGCGCCGGCCGGGGCGGGGTGAGTCACGGCCCGCCCGCTCCCATTGTGCGGCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGCGGAGCGGAGCGCGAGGAGGTGGAGCCGCGGGCTGCGGGCTCCGGCGCCTGCGTCCGCCCGGCCAGCCCGGCTCTGCGCTGCGAGAGGCCGGACGGCAGTCGCGGCTGCGCTCGGGAGAGAGCGCGGGGGACATGGGGCGCGGCGGCCCGCCTGGGCCTCGCAGGCTCCGGAGCCCCGAG
Seq A exon
GGCTCCCCGCTAGGCCCCCTCAGTGGCCCCTCCTTCTCACCTGGGTCTCGGGTCCCCTAGTGAGCGAGAGCGTCCCCAGCCGCCTACCTGGCCATGGCCAACGGAGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
Seq C2 exon
GTCCGGGTGCCCTTGGAGGAGCCCCCTCTAAGTCCAGACGTGGAGGAGGAGGACGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-'1-6,'1-4,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.969
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCGAGGAGGTGGAG
R:
CTTGCCCAAGTCATCGTCCTC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)