HsaEX6018785 @ hg38
Exon Skipping
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:219627327-219628570:+
Coord C1 exon
chr2:219627327-219627745
Coord A exon
chr2:219627960-219628043
Coord C2 exon
chr2:219628405-219628570
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGGGTCTCGGGTCCCCTAGTGA
3' ss Score
4.86
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GGGGAGGGGAGGCTAAAAGCAGGGTTGGGGAGCGAATCTGGGGGATTGTGGGAATATCGGGCCGCGCCCCAGCCCCCAGCGATGCGTGGGGCGCCTGGAGAAGGGGCGCACGGGCAGGTGGGGTGCTGCGGGGCCCGCGCGTGGGGGCCGCGCCGGCCGGGGCGGGGTGAGTCACGGCCCGCCCGCTCCCATTGTGCGGCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGCGGAGCGGAGCGCGAGGAGGTGGAGCCGCGGGCTGCGGGCTCCGGCGCCTGCGTCCGCCCGGCCAGCCCGGCTCTGCGCTGCGAGAGGCCGGACGGCAGTCGCGGCTGCGCTCGGGAGAGAGCGCGGGGGACATGGGGCGCGGCGGCCCGCCTGGGCCTCGCAGGCTCCGGAGCCCCGAG
Seq A exon
TGAGCGAGAGCGTCCCCAGCCGCCTACCTGGCCATGGCCAACGGAGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
Seq C2 exon
GTCCGGGTGCCCTTGGAGGAGCCCCCTCTAAGTCCAGACGTGGAGGAGGAGGACGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGCGGGGGACATG
R:
TTGCTGATGAGGTCCCCAAAC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains