DreEX0073051 @ danRer10
Exon Skipping
Gene
ENSDARG00000028173 | slc4a2a
Description
solute carrier family 4 (anion exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-051101-2]
Coordinates
chr2:32447538-32468714:-
Coord C1 exon
chr2:32468649-32468714
Coord A exon
chr2:32458248-32458406
Coord C2 exon
chr2:32447538-32447694
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTGTGTCACATCAGGTT
3' ss Score
6.77
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
TGGGACTTTGCCATCGCTCTACAATGACTGCTGTAGTTGTAGTCGTCCTGCAGTGAGCATTCCGAG
Seq A exon
GTTATGCTGCCCGAAAGTTCCCAGTTGAGTCTGAGTAAAAGAGAAAAGGGCTAAAGCCGGAGCACTTTAAAGCATCTCCCACAAATCTGACCATAAGCAATGAGTGACCCTCAGGATGCCAGTGACGTCACTTCTGCCGCAGGCTTGACCAGACATTTG
Seq C2 exon
CCTATTGCAGTGCAGCCTCCCCCTCAGCGATGTGATGATGAAGATGAAGGGGATTTAAATAAGACACTGGGAGTCCAGCGTTTCCAGCAGATCCTCACACCGCCTCAGCGCCTGCCCACCGAACAACACCGCACTTTTAACGAGGAGGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028173_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTTTGCCATCGCTCTA
R:
AAGTCCTCCTCGTTAAAAGTGCG
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]