HsaEX6011314 @ hg38
Exon Skipping
Gene
ENSG00000164889 | SLC4A2
Description
solute carrier family 4 member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr7:151059570-151064367:+
Coord C1 exon
chr7:151059570-151059762
Coord A exon
chr7:151061925-151062038
Coord C2 exon
chr7:151064202-151064367
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAGGCCTCTCCCCCATCCAGGTT
3' ss Score
8.31
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ACGGTGCGCCGGGGGGCGCGCACGCAGGGGGCTGGCCTGCCCGCGGCGCGGGGGAAAGTTGAGTTGGGAGAAGTTGGGAGCGGCGGGGGCGCGCCCCGGGGTGGGCACGGGGCAGTCGTCGGGAGCGCGCGAGTGCGCCGGAGGACGGGGAGAGACCCCGAGACCCCCGGGGCACGAAGTCCAGAGCGAGCGG
Seq A exon
GTTATGCCTCCGCCTCGTTGCCCTGAAAGCCGCAGCGACAGCGAAAAGGGCTAAGATTCGGCCATGAGCAGCGCCCCTCGGCGCCCCGCCAAGGGCGCAGATTCTTTCTGTACG
Seq C2 exon
CCAGAGCCAGAGAGCTTGGGCCCTGGGACGCCTGGGTTCCCCGAGCAGGAGGAAGACGAACTTCACCGCACCCTGGGCGTGGAGCGGTTTGAGGAGATCCTACAGGAGGCCGGGTCTCGTGGAGGGGAGGAGCCAGGCCGCAGCTATGGGGAGGAAGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164889-'3-12,'3-8,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.998
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAAAGTTGAGTTGGGAG
R:
GATCTCCTCAAACCGCTCCAC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains