RnoEX0082808 @ rn6
Exon Skipping
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7276957-7281223:-
Coord C1 exon
chr4:7281091-7281223
Coord A exon
chr4:7278920-7279033
Coord C2 exon
chr4:7276957-7277122
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGACCCTTTCCCCCACTCAGGTT
3' ss Score
9.6
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAGTTGGGAGAAGTTGGGAGCGGCGGGGGCGCGCCCCGGGGTGGGCACCGGGAAATCGTCGGGAGCGCGCGAGGGTTCCGGAGGATCAGGGGAGACCCGGAGACCCCCGGGACACGAAATCTAGAGCTAGCGG
Seq A exon
GTTATGCCTCCACCTTGTTGCCCTGAAAGCCGAAGCGACAGTGAGAAGGGCTAAGATTTGGCCATGAGCAGCGCCCCCAGGCGCCCCGCCTCGGGCGCAGATTCTTTGCACACG
Seq C2 exon
CCAGAGCCAGAGAGCCTGAGCCCCGGAACACCTGGGTTCCCTGAGCAAGAGGAGGAAGATGAACTTCGTACCTTAGGTGTGGAGCGGTTCGAGGAGATCCTCCAGGAAGCTGGATCCAGAGGAGGAGAAGAGCCAGGCCGCAGCTATGGGGAGGAAGACTTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347-'4-3,'4-0,10-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGGAGAAGTTGGGAGC
R:
TCCTCTGGATCCAGCTTCCTG
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]