MmuEX6016352 @ mm10
Exon Skipping
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:24425232-24429578:+
Coord C1 exon
chr5:24425232-24425435
Coord A exon
chr5:24427523-24427636
Coord C2 exon
chr5:24429416-24429578
Length
114 bp
Sequences
Splice sites
3' ss Seq
TAGCCCTTTCCCCCACTCAGGTT
3' ss Score
6.85
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGGGCGCGCACGGCGCGCTGCGGGGGGCGCGCACGCTGGAGGCTGGCCTGCCCGCAGCGCGGGGGAAAGTTGAGTTGGGAGAAGTTGGGAGCGGCGGGGGCGCGCCCCGGGGTGGGCACCGGGAAATCGTCGGGAGCGCGCGAGGGTTCCGGAGGATCAGGGGAGACCCGGAGACCCCCGGGACACGAAATCTAGAGCTAGCGG
Seq A exon
GTTATGCCTCCACCTTGTTGCCCTGAAAGCCGAAGCGACAGCGAGAAGGGCTAAGATTTGGCCATGAGCAGCGCCCCCAGGCGCCCCGCCTCGGGCGCAGATTCTTTGCACACG
Seq C2 exon
CCAGAGCCAGAGAGCCTGAGCCCCGGAACACCTGGGTTCCCCGAGCAAGAGGAAGATGAACTTCGTACCTTAGGTGTGGAGCGGTTCGAGGAGATCCTCCAGGAGGCTGGATCCCGGGGAGGAGAAGAGCCAGGACGAAGCTATGGAGAGGAAGACTTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-'2-11,'2-4,12-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGGAGAAGTTGGGAGC
R:
CAGCCTCCTGGAGGATCTCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types