HsaEX6011314 @ hg19
Exon Skipping
Gene
ENSG00000164889 | SLC4A2
Description
solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) [Source:HGNC Symbol;Acc:11028]
Coordinates
chr7:150754297-150761454:+
Coord C1 exon
chr7:150754297-150754368
Coord A exon
chr7:150759012-150759125
Coord C2 exon
chr7:150761289-150761454
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAGGCCTCTCCCCCATCCAGGTT
3' ss Score
8.31
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AAGCCAGGAAATGCCTCCTGAGAGAGGTGAAGGCAGCGTCTCAGTATGCAAGGGAAGGGATTCAGGGTGAAG
Seq A exon
GTTATGCCTCCGCCTCGTTGCCCTGAAAGCCGCAGCGACAGCGAAAAGGGCTAAGATTCGGCCATGAGCAGCGCCCCTCGGCGCCCCGCCAAGGGCGCAGATTCTTTCTGTACG
Seq C2 exon
CCAGAGCCAGAGAGCTTGGGCCCTGGGACGCCTGGGTTCCCCGAGCAGGAGGAAGACGAACTTCACCGCACCCTGGGCGTGGAGCGGTTTGAGGAGATCCTACAGGAGGCCGGGTCTCGTGGAGGGGAGGAGCCAGGCCGCAGCTATGGGGAGGAAGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164889-'0-12,'0-9,8-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAGGAAATGCCTCCT
R:
TCAAAGTCTTCCTCCCCATAGCT
Band lengths:
236-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)