DreEX6095860 @ danRer10
Exon Skipping
Gene
ENSDARG00000052330 | slc4a2b
Description
solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
Coordinates
chr24:33422441-33451857:-
Coord C1 exon
chr24:33451718-33451857
Coord A exon
chr24:33439672-33439840
Coord C2 exon
chr24:33422441-33422603
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGGCATTTAATTGTTGACAGGTT
3' ss Score
5.89
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CTGATACACTGTGCTTTATAAGTTCTCTCTCTCTGTGCTCTCTGACCGTGTTTCTGTCTGTCCTTCTCTCTCTGTACACAGTGGCTGTTGGCTTTACACTAAGATGTCAGCAGCGGCTTCTCTGCAGTGAGCACTTTGAG
Seq A exon
GTTATGCTGCCCGTAAACTCCTGCCTGAGTCTCAGTGAGAAAGAGAAAGGCTAAAGGCTGTGCGGAAACGAGTGTTGTTCAGCGGGTTCACAGTGTCCTGACGGCAGCCATGACTGACCCTGTGACTTCAGACCAACTCACCAACGCTGTGGATTCAGTCGTTCACAAT
Seq C2 exon
CCTGAGTCCTCATCCTTACCTGTCCGAGTTTCACAGAGGGAGGAAGAGGAGGAAGATGACCTGAACAAATCATTAGGGGTTCAGCGCTTCCAGCAGATCCTCAGTCCCACTGCCAGAGTTCCCGGCGATCAGCACCGATCCTACAATGAGAAAGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052330-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGTGCTCTCTGACCGT
R:
TTGTAGGATCGGTGCTGATCG
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]