GgaEX1053583 @ galGal4
Exon Skipping
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21521261-21529546:-
Coord C1 exon
chr7:21529467-21529546
Coord A exon
chr7:21525760-21525900
Coord C2 exon
chr7:21521261-21521598
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCCCTCTCTCCACAGGTT
3' ss Score
14.36
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCACGGCACGGCACGGCACGGCACGGGTCGGGCGGAGCGCGGCGCGGCGGCGGGCGGCTCTCCTAACCCGGCGGTGCGAG
Seq A exon
GTTATGCCACTCTCCAGGTTTGCTGGGTGCCTGCCGGTGAAAGAGAAGGGTTGATATTTTGCCCAGGCCCTTAGGTCCTGAACCAAAATGGCAGCTGGCGAGTCCCCTCCCGTAGGAGATGCCTTCATCGACCTGCAGCAG
Seq C2 exon
TCCACCGCCAAACCTCGCACCACATCCATCATCCCCTTTCCACTCACCTCCCTTCTGCCCTCAAGTTCCAAAAGAGGCCCCCCCGTGCCGGCAGGAGGAAAAAAAGAAGAAGGAAAAAGAAGAAAACCTCAGTACCCCCCTCAGAGGTCACCCCTACCATCCAAGAAGTGGACGAGGAAGGAGGAGAAGAGGAGGAAGAAGAGGAAGAAGAAGAAGAGGAGGAAGAAGGAGAGTCTGAGACAGAGGAAGTTCAGGAGAAGGAGGTCTTTGTAGAGTTTGAGGGCGAAGATCGTGGGAAGGACACATCCCCTAAGCTGGAGCCCCCAAGCAAACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224_MULTIEX2-1/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTAACCCGGCGGTG
R:
AGACTCTCCTTCTTCCTCCTCT
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]