RnoEX0082822 @ rn6
Exon Skipping
Gene
ENSRNOG00000020138 | Slc4a3
Description
solute carrier family 4 member 3 [Source:RGD Symbol;Acc:3712]
Coordinates
chr9:82741920-82743566:+
Coord C1 exon
chr9:82741920-82742813
Coord A exon
chr9:82742972-82743114
Coord C2 exon
chr9:82743401-82743566
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCCTCCTTCCCCAAGGCT
3' ss Score
8.45
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAAATGCTTTCAGGGGTCTGTGATCTTGGAAACGGGCCCAAGCTGGAGAGGCTTGTTTGCGCGAAGAGGGTCTCCTCCAGGGCTCCTGAGGGAAAGGGAGGGGTGGCTAAAAGCAAGGTGGAGGAGTGCGTTTGAGGGATTGTGGGAATTTAGGGCCGTGCACCCGCCCCTCCTCCCCCCGCAATGCGTGGGGCGCCTGGAAAGGGGTCTTGCGGGCAGGTGGGATCCTGCGGGGACCCGAGCGCCGGGCCCATGCTGGCCCAGTCGGGGTAAGTCAGGAATCGTCCACTCCCATTGTGCGGCCGGGCGGCGGCCGGCTGGCAGAGCCGAGCTCTAGGAGGTGGAGCCGTGGACTGCGGGCTCCGGCGCCTGCGTCCGACCTGCCCGGCTCTGCGCGGCGAGAGGCCGGACGGGAACCCGGCAGCCGCGCCCCGGCGCTAGCGGGGAGGGACATGGGGCGCGGCGGTTCTCCCAAGCCCCGCAGGTTCCGGAGCCCGGAG
Seq A exon
GCTCCCCAAGAGGTCTCCGCAGCGCCCCCTTCTTCTCACCCAGGATTTGGGTCCCGTAGTGACTGAGAGACTCCTAAGTCTTCAGCCCAACCATGGCTAATGGGGTGATCCCACCGCCCGGGGGCGCCTCCCCCCTACCCCAG
Seq C2 exon
GTCCGGGTGCCCTTGGAGGAGCCCCCACTGGGTCCAGATGTAGAAGAGGAGGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGACCCCGGCCTGGGACCCTGAGAAGCCTAGCCGCAGCTACAGCGAGCGCGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020138_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCTCTAGGAGGTGGAG
R:
CCAAGGTCTTGCCCAAGTCAT
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]