MmuEX0043402 @ mm10
Exon Skipping
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75546462-75547398:+
Coord C1 exon
chr1:75546462-75546613
Coord A exon
chr1:75546772-75546921
Coord C2 exon
chr1:75547233-75547398
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCCTCCTTCCTCAAGGCT
3' ss Score
8.23
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGACTGCAGGCTCCGGCGCCTGCGTCCGCCTGGCCGGGCTCTGCGCGGCGAGAGGCCGGACGGGAACCCGGCAGCCGCGCCCCGGAGCTTGCGGGGAGGGACATGGGGCGCGGCGGCTCTCCCAAGCCCCGCAGGTTCCGGAGCCCGGAG
Seq A exon
GCTCCCCAAGAGGTCTCTGCAGCGCCCCCTTCTTCTCACCCAGGGTTTGGGTCCCATAGTGATTGAGAGACTCCTAAGTCTTCAGTCTTCAGCCCTGCCATGGCTAATGGGGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
Seq C2 exon
GTCCGGGTGCCCTTGGAGGAGCCCCCTCTGGGTCCAGATGTAGAAGAGGAAGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGACCCCGGCCTGGGACCCCGAGAAGCCTAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-'1-9,'1-6,3-9
Average complexity
C1
Mappability confidence:
88%=67=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.986
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTGCAGGCTCCGG
R:
CAAACCTGCTCACAGCCAAGG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types