HsaEX6024057 @ hg19
Exon Skipping
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61345109-61396451:+
Coord C1 exon
chr17:61345109-61345234
Coord A exon
chr17:61391749-61392030
Coord C2 exon
chr17:61396318-61396451
Length
282 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTTGTTCCTTTCAGTTC
3' ss Score
10.25
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
CCACCAGCTCTGCCCACTTGGAAGACCTTGCTTACCTGGATGAGCAGAGACATACACCTTTGAGAACTTCTCTACGAATGCCAAGACAGAGCATGGGTGGTGCTCGCACACAGCAGGATTTAAGAG
Seq A exon
TTCGCTTTGCACCTTATAGGCCTCCAGATATCTCCTTGAAGCCTCTGCTCTTTGAAGTGCCCAGCATCACTACAGAGTCAGTGTTTGTTGGCCGAGATTGGGTTTTCCACGAAATAGATGCTCAACTTCAAAGTTCAAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGATTCGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACAAGGATGAGACAGATCGCCTCAGACAGCCCACATGCCTCCCCCAAAC
Seq C2 exon
ATGTGGATGCCAACAGAGAGCTGCCACTCACACAGCCACCTTCAGCCCACTCATCTATCACCAGTGGAAGCTGCCCAGGAACTCCGGAAATGCGCAGGCGGCAGGAGGAGGCTATGCGAAGACTAGCCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.137 C2=0.856
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(31.6=70.5)
C2:
PF131911=AAA_16=PD(21.8=42.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGCTCTGCCCACTT
R:
CTGCGAGGCTAGTCTTCGCAT
Band lengths:
260-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)