RnoEX0088550 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94011814-94034429:+
Coord C1 exon
chr10:94011814-94011939
Coord A exon
chr10:94029244-94029525
Coord C2 exon
chr10:94034296-94034429
Length
282 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTTGTTCCTTTCAGTTC
3' ss Score
10.65
5' ss Seq
AACGTATGT
5' ss Score
7.69
Exon sequences
Seq C1 exon
CCACCAGTTCTGCCCACTTGGAGGACCTTGCTTACCTGGATGAGCAGAGACATACTCCTTTGAGGACGTCTCTTCGAATGCCAAGACAGAGCATGAGTGGTGCTCGCACACAGCAGGATCTCAGAG
Seq A exon
TTCGATTTGCACCTTACAGACCTCCAGATATCTCCCTGAAGCCCCTCCTCTTTGAAGTGCCCAGCATTACCACAGAGTCAGTGTTTGTTGGCCGAGATTGGGTATTCCATGAGATCGATGCTCAGCTGCAGAGTTCCAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGGTTTGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACACGGATGAGACAGATCGCCTCTGATAGCCCACACGCCTCCCCTAAAC
Seq C2 exon
ATGTGGATGCCAACAGAGAGCTACCCCTTACCCAAGCACCTTCAGCCCACTCTTCTATTGCCAGTGGAAGCTGTCCAGGAACTCCAGAAATGCGCAGGCGGCAGGAGGAAGCCATGCGGAGACTTGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.137 C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(31.6=70.5)
C2:
PF131911=AAA_16=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGTTCTGCCCACTTG
R:
CTGTGAGGCAAGTCTCCGCAT
Band lengths:
260-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]