DreEX6016291 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22645598-22653997:+
Coord C1 exon
chr3:22645598-22645726
Coord A exon
chr3:22652560-22652841
Coord C2 exon
chr3:22653870-22653997
Length
282 bp
Sequences
Splice sites
3' ss Seq
CATTGTTTCCCCTGCTGCAGTGC
3' ss Score
6.62
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCACCAGTTCGGCTCACCTGGAGGACCTTGCGTATCTGGATGAGCAGAGACAGGCTCCACTGCGCACTTCTTTGAGAATGCCACGTCAGAACTCCGGTTCGAGCCGAACTGGACAAGCAGACATGAGAG
Seq A exon
TGCGTTTTGCTCCGTATCGGCCGCCGGACATCGCCCTGAAACCGCTGCTCTTCGAAGTGCCCAGTTTGACACCTGATGCAGTTTTCACTGGTCGAGAGTGGCTGTTCCAGGAAGTGGACATGTGTCTCCGCAGCAGTGAGTCCACCACCAGTCAAGGTGTCATTATTGTAGGCAACGTGGGTTTCGGCAAGACGGCCATCATCTCTCGCTTGGTGGCTCTCAGCTGCCACGGCAACCGCATGAGACAGATCACCTCTGACAGTCCACACGCTTCACCAAAAC
Seq C2 exon
ATGGAGACACGCTACCATTGAGTCAGCCTCAGTCTGCTCATGGCACTCTGGTTGGAGGAAGCAGCTGCCCTGGAACACCAGAGATGAGGAGACGCCAGGAGGAGGCGCTCAGAAGACTGGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'19-23,'19-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.147 C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(29.4=70.5)
C2:
PF131911=AAA_16=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGGCTCACCTGGAGG
R:
CTGGGCAGCCAGTCTTCTGAG
Band lengths:
252-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]