GgaEX1000095 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2572817-2582164:+
Coord C1 exon
chr27:2572817-2572942
Coord A exon
chr27:2578924-2579205
Coord C2 exon
chr27:2582031-2582164
Length
282 bp
Sequences
Splice sites
3' ss Seq
GTCCCGGTGTTTGCTTGCAGTGC
3' ss Score
7.57
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCACCAGCTCGGCCCACCTGGAGGACCTGGCATACCTGGACGAGCAGCGGCACACCCCCCTGCGCACCTCCCTCCGCATGCCCCGGCAGAGCGTGGCCGGAGCCCGCACACAGCAGGACCTGCGAG
Seq A exon
TGCGCTTTGCACCCTACCGACCTCCGGACATCTCCCTGAAGCCGCTGCTCTTCGAGGTCCCCAGCATCACCACCGAGTCCGTCTTCGTGGGCCGGGATTGGGTGTTCCATGAGATCGACGCGCAGCTGCAGAGCTCCAACGCCAGCGTGAACCGCGGGGTGGTGATCGTGGGGAACATCGGCTTTGGGAAGACCGCCATCATCTCCAGGCTGGTTGCGCTCAGCTGCCACGGCACTCGCATGAGGCAGATCGCATCCGACAGCCCGCACGCCTCGCCCAAAC
Seq C2 exon
ATGTGGATGCAAACAGAGAGCTGCCCTTAACCCAACCGCCTTCTGCTCACTCCTCCATCGCCAGCGGGAGCTGCCCGGGGACCCCCGAGATGCGCCGGCGCCAGGAGGAGGCCATGAGGAGGCTTGCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'16-8,'16-7,18-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGGACCTGGCATACC
R:
CTGGGAAGCAAGCCTCCTCAT
Band lengths:
244-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]