BtaEX0035578 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48298571-48326663:+
Coord C1 exon
chr19:48298571-48298696
Coord A exon
chr19:48320939-48321220
Coord C2 exon
chr19:48326530-48326663
Length
282 bp
Sequences
Splice sites
3' ss Seq
TCTCTTATTGTTCCTTCCAGTCC
3' ss Score
9.32
5' ss Seq
AACGTAGGT
5' ss Score
7.3
Exon sequences
Seq C1 exon
CCACAAGCTCTGCCCACTTGGAGGACCTCGCTTACCTGGATGAACAGAGACATACCCCTTTGAGAACTTCTCTTCGAATGCCAAGACAGAGCATGGCCGGTGCTCGCACGCAACAGGATTTAAGAG
Seq A exon
TCCGCTTTGCACCTTACAGACCTCCCGATATCTCCCTGAAGCCCCTGCTCTTTGAAGTGCCCAGCATCACTACGGAGTCGGTGTTCGTTGGTCGGGATTGGGTTTTCCATGAAATAGATGCTCAGCTTCAAAGTTCAAACGCCAGCGTGAACCAGGGAGTCGTGATCGTGGGAAACATTGGGTTCGGCAAAACTGCCATCATTTCCAGACTGGTGGCCCTCAGCTGCCACGGAACACGGATGAGACAAATCGCCTCTGACAGCCCACACGCCTCCCCCAAAC
Seq C2 exon
ATGTGGATGCCAACAGAGAGCTGCCACTCACACAGCCACCGTCAGCCCACTCTTCCATCACCAGTGGAAGCTGCCCAGGAACTCCAGAAATGCGCAGGCGGCAGGAGGAGGCCATGCGGAGACTAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.137 C2=0.844
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(31.2=70.5)
C2:
PF131911=AAA_16=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGCTCTGCCCACTTG
R:
CTGTGAGGCTAGTCTCCGCAT
Band lengths:
260-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development