GgaEX1000095 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2487163-2499478:+
Coord C1 exon
chr27:2487163-2487267
Coord A exon
chr27:2496238-2496519
Coord C2 exon
chr27:2499345-2499478
Length
282 bp
Sequences
Splice sites
3' ss Seq
GTCCCGGTGTTTGCTTGCAGTGC
3' ss Score
7.57
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCACCAGCTCGGCCCACCTGGAGGACCTGGCATACCTGGACGAGCAGCGGCACACCCCCCTGCGCACCTCCCTCCGCATGCCCCGGCAGAGCGTGGCCGGAGCCC
Seq A exon
TGCGCTTTGCACCCTACCGACCTCCGGACATCTCCCTGAAGCCGCTGCTCTTCGAGGTCCCCAGCATCACCACCGAGTCCGTCTTCGTGGGCCGGGATTGGGTGTTCCATGAGATCGACGCGCAGCTGCAGAGCTCCAACGCCAGCGTGAACCGCGGGGTGGTGATCGTGGGGAACATCGGCTTTGGGAAGACCGCCATCATCTCCAGGCTGGTTGCGCTCAGCTGCCACGGCACTCGCATGAGGCAGATCGCATCCGACAGCCCGCACGCCTCGCCCAAAC
Seq C2 exon
ATGTGGATGCAAACAGAGAGCTGCCCTTAACCCAACCGCCTTCTGCTCACTCCTCCATCGCCAGCGGGAGCTGCCCGGGGACCCCCGAGATGCGCCGGCGCCAGGAGGAGGCCATGAGGAGGCTTGCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'6-5,'6-4,8-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.137 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(31.2=70.5)
C2:
PF131911=AAA_16=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCTGGAGGACCTG
R:
CTGGGAAGCAAGCCTCCTCAT
Band lengths:
228-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]