HsaEX6025160 @ hg38
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78459784-78461708:-
Coord C1 exon
chr17:78461544-78461708
Coord A exon
chr17:78460162-78460257
Coord C2 exon
chr17:78459784-78460001
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCATCTTCCTTCCAGAAC
3' ss Score
10.92
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGGATGATTTGAAAGCCAAGTTGGCGATTCAGGAGGCTGAGCTCAAGCAGAAGAATGAGAGCGCAGACCAACTGATCCAGGTGGTCGGCATCGAGGCCGAGAAGGTCAGCAAAGAGAAGGCCATTGCTGACCAGGAAGAAGTCAAGGTCGAGGTCATCAATAAG
Seq A exon
AACGTCACTGAGAAGCAAAAGGCCTGTGAAACAGACCTGGCCAAAGCAGAACCGGCCCTGCTGGCAGCCCAGGAGGCTCTGGACACTCTGAATAAG
Seq C2 exon
AACAACCTGACAGAGCTGAAGTCCTTTGGGTCCCCGCCGGATGCTGTGGTCAACGTCACCGCCGCCGTCATGATTCTGACCGCACCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCGGCCAAGATCATGATGGGCAAGGTGGACACCTTCCTAGACTCCCTGAAGAAGTTCGACAAGGAGCACATCCCTGAGGCCTGCCTGAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'81-89,'81-88,82-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.7=100)
A:
PF127772=MT=FE(9.0=100)
C2:
PF127772=MT=FE(20.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGCTGACCAGGAAGAA
R:
CATCATGATCTTGGCCGCCTT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains