BtaEX0011577 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54379432-54381565:+
Coord C1 exon
chr19:54379432-54379596
Coord A exon
chr19:54381115-54381210
Coord C2 exon
chr19:54381348-54381565
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCATCTGGCTTCCTTCCAGAAT
3' ss Score
8.68
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGACGATTTAAAAGCCAGGCTGGCGGTTCAGGAGGCAGAGCTCAAGCAGAAAAACGAGAATGCGGACAAGCTGATCCATGTGGTGGGTGTGGAGACCGAGAAAGTCAGCAAGGAGAAAGCCATTGCTGATGAGGAGGAGATCAAGGTGGAGGTCATCAACAAG
Seq A exon
AATGTCACCGAGAAACAAAAGGCCTGTGAAACGGACCTGGCCAAGGCAGAGCCGGCCCTGCTGGCCGCGCAAGAGGCTCTTGACACCCTGAACAAG
Seq C2 exon
AACAACCTGACGGAGCTGAAGTCCTTCGGGTCCCCCCCGGATGCCGTGGTCAACGTCACGGCCGCTGTGATGATTCTGACCGCACCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAAGCTGCGAAAATCATGATGGGCAAGGTGGACACCTTCCTGGACTCCTTGAAAAAGTTCGACAAGGAGCACATCCCCGAGGCCTGCCTGAAAGCGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'59-62,'59-61,60-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.7=100)
A:
PF127772=MT=FE(9.0=100)
C2:
PF127772=MT=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCATGTGGTGGGTGTG
R:
TGCGGTCAGAATCATCACAGC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development