RnoEX0028485 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107062872-107065870:-
Coord C1 exon
chr10:107065706-107065870
Coord A exon
chr10:107063173-107063268
Coord C2 exon
chr10:107062872-107063089
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGTCTCCCTTCTAGAAC
3' ss Score
10.64
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGGATGACCTAAAGGCCAAGCTGGCGGTTCAGGAGGCCGAGCTGAAGCAGAAGAACGAAAACGCAGACAAACTGATCCAGGTGGTGGGCGTGGAGACTGAGAAGGTTAGCAAGGAGAAGGCCATTGCCGACGAGGAGGAGATCAAGGTGGAGGTCATCAATAAG
Seq A exon
AACGTTACTGAGAAACAGAAAGCCTGTGAAACAGACCTGGCCAAGGCAGAACCAGCCCTCTTGGCCGCACAAGAGGCCCTGGATACCCTGAACAAG
Seq C2 exon
AACAACCTGACAGAGCTGAAGTCCTTCGGATCCCCACCAGATGCCGTGGTCAACGTCACAGCCGCTGTCATGATCCTGACGGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCCAAGATCATGATGGGCAAGGTGGACACATTCCTCGACTCGCTGAAGAGGTTCGACAAGGAACACATCCCGGAAGCCTGCCTAAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'64-71,'64-70,66-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.7=100)
A:
PF127772=MT=FE(9.0=100)
C2:
PF127772=MT=FE(20.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTAGCAAGGAGAAGGCCA
R:
CTTGTCCTTGGGGATCTTGCC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]