MmuEX6091636 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117913945-117917210:-
Coord C1 exon
chr11:117917046-117917210
Coord A exon
chr11:117914244-117914339
Coord C2 exon
chr11:117913945-117914162
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCGTTTATCTCCCTTCTAGAAT
3' ss Score
10.86
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGGACGACCTAAAGGCCAAGCTGGCCGTGCAGGAGACTGAGCTGAAGCAGAAGAATGAGAATGCAGACAAGCTGATCCAGGTGGTGGGTGTGGAGACGGAGAAGGTCAGCAAGGAGAAAGCCATTGCGGACGAGGAGGAGATGAAGGTGGAGGTCATCAACAAG
Seq A exon
AATGTTACTGAGAAACAGAAAGCCTGTGAAACAGACCTGGCCAAGGCCGAGCCAGCGCTCTTGGCAGCACAAGAGGCCCTGGACACCCTGAACAAG
Seq C2 exon
AACAACCTGACCGAGCTGAAGTCCTTCGGATCCCCGCCAGACGCTGTGGTCAACGTCACAGCTGCTGTCATGATCCTGACAGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCGAAGATCATGATGGGCAAGGTGGACACATTCCTGGACTCGCTGAAGAAGTTCGACAAGGAACACATCCCCGAGGCCTGCCTAAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'66-65,'66-64,67-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.045 C2=0.001
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.7=100)
A:
PF127772=MT=FE(9.0=100)
C2:
PF127772=MT=PD(39.5=35.6),PF127772=MT=PU(32.4=61.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGCTGATCCAGGTGGTG
R:
ATCATGACAGCAGCTGTGACG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: