MmuEX6091636 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118052631-118055896:-
Coord C1 exon
chr11:118055732-118055896
Coord A exon
chr11:118052930-118053025
Coord C2 exon
chr11:118052631-118052848
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCGTTTATCTCCCTTCTAGAAT
3' ss Score
10.86
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGGACGACCTAAAGGCCAAGCTGGCCGTGCAGGAGACTGAGCTGAAGCAGAAGAATGAGAATGCAGACAAGCTGATCCAGGTGGTGGGTGTGGAGACGGAGAAGGTCAGCAAGGAGAAAGCCATTGCGGACGAGGAGGAGATGAAGGTGGAGGTCATCAACAAG
Seq A exon
AATGTTACTGAGAAACAGAAAGCCTGTGAAACAGACCTGGCCAAGGCCGAGCCAGCGCTCTTGGCAGCACAAGAGGCCCTGGACACCCTGAACAAG
Seq C2 exon
AACAACCTGACCGAGCTGAAGTCCTTCGGATCCCCGCCAGACGCTGTGGTCAACGTCACAGCTGCTGTCATGATCCTGACAGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCGAAGATCATGATGGGCAAGGTGGACACATTCCTGGACTCGCTGAAGAAGTTCGACAAGGAACACATCCCCGAGGCCTGCCTAAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'74-78,'74-77,75-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.7=100)
A:
PF127772=MT=FE(9.0=100)
C2:
PF127772=MT=FE(20.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGCTGATCCAGGTGGTG
R:
ATCATGACAGCAGCTGTGACG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types