HsaEX6032434 @ hg19
Exon Skipping
Gene
ENSG00000060718 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Coordinates
chr1:103440386-103444469:-
Coord C1 exon
chr1:103444416-103444469
Coord A exon
chr1:103444264-103444308
Coord C2 exon
chr1:103440386-103440439
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTTGGTGCCAGGGC
3' ss Score
8.54
5' ss Seq
AGAGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GGTCCTCGAGGTTCAAGAGGTGCAAGAGGTCCCACTGGGAAACCTGGGCCAAAG
Seq A exon
GGCACTTCAGGTGGCGATGGCCCTCCTGGCCCTCCAGGTGAAAGA
Seq C2 exon
GGTCCTCAAGGACCTCAGGGTCCAGTTGGATTCCCTGGACCAAAAGGCCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000060718-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.866 A=0.874 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(3.0=11.1)
A:
PF0139113=Collagen=PU(12.5=53.3)
C2:
PF0139113=Collagen=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCGAGGTTCAAGAGGT
R:
GCCTTTTGGTCCAGGGAATCC
Band lengths:
102-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)