RnoEX6011206 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216979098-216983989:+
Coord C1 exon
chr2:216979098-216979151
Coord A exon
chr2:216979266-216979310
Coord C2 exon
chr2:216983936-216983989
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGCTTTGTTGCCAGGGT
3' ss Score
6.9
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACAGGAAAACCTGGGCCGAAG
Seq A exon
GGTACATCAGGTGGTGATGGCCCTCCTGGCCCACCAGGCGAAAGG
Seq C2 exon
GGCCCTCAAGGACCTCAAGGTCCAGTTGGATTCCCTGGACCAAAAGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCGAGGTTCCAGAGG
R:
GCCTTTTGGTCCAGGGAATCC
Band lengths:
102-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]