HsaEX6033963 @ hg38
Exon Skipping
Gene
ENSG00000196189 | SEMA4A
Description
semaphorin 4A [Source:HGNC Symbol;Acc:HGNC:10729]
Coordinates
chr1:156162944-156174940:+
Coord C1 exon
chr1:156162944-156163094
Coord A exon
chr1:156172826-156173006
Coord C2 exon
chr1:156174822-156174940
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTCCTCCTTTAGTGC
3' ss Score
10.86
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAGGTTGGCGGGACCAGGAGCTCTGCGGTTTGTGCCTTCTCTCTCTTGGACATTGAACGTGTCTTTAAGGGGAAATACAAAGAGTTGAACAAAGAAACTTCACGCTGGACTACTTATAGGGGCCCTGAGACCAACCCCCGGCCAGGCAGT
Seq A exon
TGCTCAGTGGGCCCCTCCTCTGATAAGGCCCTGACCTTCATGAAGGACCATTTCCTGATGGATGAGCAAGTGGTGGGGACGCCCCTGCTGGTGAAATCTGGCGTGGAGTATACACGGCTTGCAGTGGAGACAGCCCAGGGCCTTGATGGGCACAGCCATCTTGTCATGTACCTGGGAACCA
Seq C2 exon
CCACAGGGTCGCTCCACAAGGCTGTGGTAAGTGGGGACAGCAGTGCTCATCTGGTGGAAGAGATTCAGCTGTTCCCTGACCCTGAACCTGTTCGCAACCTGCAGCTGGCCCCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196189-'31-38,'31-35,38-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.049 C2=0.050
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.0=100)
A:
PF0140314=Sema=FE(14.5=100)
C2:
PF0140314=Sema=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCAGGAGCTCTGCG
R:
CAGGTTGCGAACAGGTTCAGG
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains