HsaEX6056675 @ hg38
Exon Skipping
Gene
ENSG00000157445 | CACNA2D3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr3:54969800-55004838:+
Coord C1 exon
chr3:54969800-54969844
Coord A exon
chr3:54984608-54984670
Coord C2 exon
chr3:55004763-55004838
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTAATTTTCTAGACT
3' ss Score
9.55
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTGCTTCCCTGGATGGCAAATGCTCCATCAGCTGTGATGATGAG
Seq A exon
ACTGTGAATTGTTACCTCATAGACAATAATGGATTTATTTTGGTGTCTGAAGACTACACACAG
Seq C2 exon
AATTACCCTTTATGACTACCAAGCCATGTGTAGAGCCAACAAGGAAAGCAGCGATGGCGCCCATGGCCTCCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157445_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCTGGATGGCAAATG
R:
CCATCGCTGCTTTCCTTGTTG
Band lengths:
100-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains