MmuEX0008825 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:28969158-28981201:-
Coord C1 exon
chr14:28981157-28981201
Coord A exon
chr14:28972216-28972278
Coord C2 exon
chr14:28969158-28969228
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTCTGATTTTCTAGACT
3' ss Score
9.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTGCCTCCCTGGATGGCAAATGCTCCATAAGCTGCGATGACGAG
Seq A exon
ACTGTGAACTGTTACCTTATAGACAATAACGGATTCATTCTGGTGTCTGAAGACTACACACAG
Seq C2 exon
ACTGGAGATTTTTTTGGTGAGGTGGAAGGAGCTGTCATGAACAAGTTGTTAACAATGGGTTCCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCTCCCTGGATGGC
R:
CTTTTAAAGGAACCCATTGTTAACAA
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types