BtaEX6094562 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46558891-46568397:-
Coord C1 exon
chr22:46568353-46568397
Coord A exon
chr22:46562169-46562231
Coord C2 exon
chr22:46558891-46558961
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTTTTTGTTTTCTAGACT
3' ss Score
8.97
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGCGCCTCTCTGGATGGCAAATGCTCAATCAGCTGTGACGACGAG
Seq A exon
ACTGTAAATTGTTACCTCATAGACAATAATGGATTTATTCTGGTATCTGAAGACTACACTCAG
Seq C2 exon
ACTGGAGACTTTTTTGGTGAGGTGGAGGGAGCTGTGATGAACAAATTGTTAACAATGGGCTCCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'27-26,'27-25,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCTCTCTGGATGGC
R:
CTTTTAAAGGAGCCCATTGTTAACA
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]