DreEX6092897 @ danRer10
Exon Skipping
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36440346-36441448:-
Coord C1 exon
chr11:36441404-36441448
Coord A exon
chr11:36440500-36440562
Coord C2 exon
chr11:36440346-36440416
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCCCTCTTATATTAGGAC
3' ss Score
9.25
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TGTAATGCTCTGGATGGGAAATGCACCATCAGTTGTGATAATGAG
Seq A exon
GACATTAAATGCTATCTCATAGACAACAATGGCTTCATCCTGGTCTCTGAAGACACTTCTCAG
Seq C2 exon
ACAAACCTCTTCTTTGGAAAAGTGGAAGGAGCCGTCATGAATAAACTGCTTCTGATGGGCTCGTTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760-'30-35,'30-34,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATGCTCTGGATGGGAAATGC
R:
TTTTTAAACGAGCCCATCAGAAGC
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]