GgaEX6010224 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7675020-7684446:+
Coord C1 exon
chr12:7675020-7675064
Coord A exon
chr12:7680767-7680829
Coord C2 exon
chr12:7684376-7684446
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTATTACTTTTTCAGGCA
3' ss Score
7.9
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGTGCGTCTCTTGATGGCAGATGTGCAATAAGTTGTGATGATGAA
Seq A exon
GCAATCAACTGTTACCTAATAGACAACAATGGATTTATCCTAGTGTCTGAAGACTATGGGCAG
Seq C2 exon
ACTGGTAACTTTTTTGGGGAGGTTGAAGGGGCTGTGATGAACAAATTGCTAACAATGGGCTCCTTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'36-42,'36-40,37-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGTCTCTTGATGGCAGA
R:
CTCTTAAAGGAGCCCATTGTTAGCA
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]