RnoEX0016133 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:4932486-5042196:-
Coord C1 exon
chr16:5042152-5042196
Coord A exon
chr16:5032886-5032948
Coord C2 exon
chr16:4932486-4932556
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCGTTCTGATTTCCTACAGACT
3' ss Score
9.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTGCCTCCCTGGATGGTAAATGCTCCATAAGCTGCGACGATGAG
Seq A exon
ACTGTGAACTGTTACCTCATAGACAATAACGGGTTCATTCTGGTGTCTGAAGACTACACACAG
Seq C2 exon
ACTGGAGATTTTTTTGGTGAGGTCGAAGGAGCTGTCATGAACAAGTTGTTAACAATGGGCTCCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCTCCCTGGATGGTAAA
R:
CTTTTAAAGGAGCCCATTGTTAACA
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]