HsaEX6063126 @ hg38
Exon Skipping
Gene
ENSG00000095370 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr9:127744564-127774467:-
Coord C1 exon
chr9:127774229-127774467
Coord A exon
chr9:127749211-127749665
Coord C2 exon
chr9:127744564-127745099
Length
455 bp
Sequences
Splice sites
3' ss Seq
CCTAACCATGCCTTCTGCAGGTC
3' ss Score
8.58
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
AGTTCTTCAAGTTCAAGGGCTTTGGGAGTCTCTCCAACCTCCCTCGGTCCTTCACTCTGAGACGATCCTCAGCTTCCATCAGTAGGCAGTCCCATTTGGAGCCTGACACCTTTGAAGCCACGCAGGATGACATGGTGACGGTGCCCAAGAGTCCCCCAGCCTATGCCCGCTCCAGTGACATGTACAGCCACATGGGCACCATGCCTCGCCCCAGCATCAAGAAAGCACAGAACTCACAG
Seq A exon
GTCTCGGAGACCTTGGTACAACGCAACGGCGACTTCCTCATCCGGGACTCACTCACCAGCCTGGGCGACTATGTGCTCACGTGCCGCTGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCAGGCGAGAGCTACACACACATCCAGTACCTGTTTGAGCAGGAGAGCTTTGACCACGTGCCCGCCCTCGTGCGCTATCATGTGGGCAGCCGCAAGGCTGTGTCAGAGCAGAGTGGTGCCATCATCTACTGCCCGGTGAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTATGGCCTGGGACAGGGGAGTAGCAAGCCTGCTAGCCCCGTCAGCCCCTCAGGCCCCAAGGGCAGCCACATGAAGCGGCGCAGCGTCACCATGACCGATGGGCTCACTGCTGACAAGGTCACCCGCAGCGATGGCTGCCCCACCAG
Seq C2 exon
TAACCCGTGTCCATGCCGCCCCTGCAGCCCCTTCTGCCACAGCATTGCCTGCCTCCCCTGTCGCCCGCCGTTCCAGTGAGCCCCAGCTGTGTCCCGGAAGTGCCCCAAAGACCCATGGGGAGTCAGACAAGGGCCCCCACACCAGCCCCTCCCACACCCTTGGCAAGGCCTCCCCGTCACCATCACTCAGCAGCTACAGTGACCCGGACTCTGGCCACTACTGCCAGCTCCAGCCTCCCGTGCGTGGCAGCCGAGAGTGGGCAGCGACTGAGACCTCCAGCCAGCAGGCCAGGAGCTATGGGGAGAGGCTAAAGGAACTGTCAGAAAATGGGGCCCCTGAAGGGGACTGGGGCAAGACCTTCACAGTCCCCATCGTGGAAGTCACTTCTTCCTTCAACCCGGCCACCTTCCAGTCACTACTGATCCCCAGGGATAACCGGCCACTGGAGGTGGGCCTTCTGCGCAAGGTCAAGGAGCTGCTGGCAGAAGTGGATGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095370_MULTIEX1-6/7=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.312 C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PD(87.7=46.7)
C2:
PF0061714=RasGEF=PU(11.3=9.5)
Main Skipping Isoform:
ENST00000314830fB25624
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCATTTGGAGCCTGAC
R:
GGTCACTGTAGCTGCTGAGTG
Band lengths:
357-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains