BtaEX6046286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015375 | SH2D3C
Description
Bos taurus SH2 domain containing 3C (SH2D3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098039]
Coordinates
chr11:98443331-98447009:-
Coord C1 exon
chr11:98446881-98447009
Coord A exon
chr11:98444974-98445428
Coord C2 exon
chr11:98443331-98443455
Length
455 bp
Sequences
Splice sites
3' ss Seq
CTGACCCTTGCCTCTTCCAGGTC
3' ss Score
11.48
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAGTACATCTTAGACTCATCGCCTGAGAAACTGCACAAGGAGTTGGAGGAAGAGCTCAAACTCAGCAGCACAGATCTCCGCAGCCATGCCTGGTACCACGGCCGCATCCCACGTGAG
Seq A exon
GTCTCGGAGACCCTGGTGCAGCGCAATGGTGACTTCCTCATCCGGGACTCGCTCACCAGCCTGGGTGACTATGTGCTTACGTGCCGCTGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCGGGTGAGAGCTACACCCACATCCAATACCTGTTCGAGCAGGAGAGCTTCGACCACGTGCCGGCCCTGGTGCGGTACCATGTGGGCAGCCGCAAGGCTGTGTCGGAGCAGAGCGGTGCCATCATCTACTGCCCGGTCAACCGCACCTTCCCACTGCGCTACCTGGAGGCCTGCTATGGCCTGGGCCAGGGCGGGGGCAAGGCCGCCAGCCCTGCCAGCCCCTCGGGCCCCAAGGGCAGCCACATGAAGCGGCGGAGCGTCACCATGACCGATGGGCTTACTGCTGACAAGGTCACCCGCAGTGATGGCTGCCCCACCAG
Seq C2 exon
CACATCACTGCCCCACCCCCGGGAATCCATCCGCAACTGTGCACTCAGCATGGACCAGATCCAAGACCTGCACTCGCCCATGTCCCCTATCTCCGAGAGCCCCAGCTCCCCTGCCTATAGTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015375-'12-10,'12-8,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.270 C2=0.977
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=46.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGTACATCTTAGACTCATCGC
R:
CGGTACTATAGGCAGGGGAGC
Band lengths:
246-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]