GgaEX0006885 @ galGal3
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
NA
Coordinates
chr17:5545459-5547950:+
Coord C1 exon
chr17:5545459-5545587
Coord A exon
chr17:5545758-5546206
Coord C2 exon
chr17:5547826-5547950
Length
449 bp
Sequences
Splice sites
3' ss Seq
GTCGCCCCATCCCCTGCCAGGTC
3' ss Score
9.36
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAATACATCCTGGACTCGTCACCGGAGAAGCTTCACAAGGAGCTGGAAGAGGAGCTGAAGCTGAGCAGCACCGACCTGCGCAGCCACGCGTGGTACCACGGCCGCATCCCGCGGGAG
Seq A exon
GTCTCAGAGAGCCTCGTGCAGAGGAACGGCGACTTCATCATCCGCGACTCGCTCACCAGTGTGGGTGACTACGTGCTGACGTGCCGCTGGCGCAACGAGCCCCTCCACTTCAAGATCAACAAGGTGACGGTGAAGTCCAGCGACGGCCGTACCCGCGTCCAGTACCTCTTCGAGCAGGAGAGCTTTGACAACGTGCCCGCCCTCGTCCGCTTCTACGTGGGCAACCGCAAGGCCATCTCCGAACAGAGCGGTGCCATCGTCTACTGCCCCATCAACCGCACCTTCCCCCTGCGCTACCTGGAGGCCAGCTATGGGCTCGCCAATGGGAAGCACGGGGGGTCCCACAGCCCGGCCTCCCAGAAGGGGGGGCACATCAAGAGGAGGAGCATCACCATGACAGACGGGCTGACAGCCGACAAGATCACCAGGGCTGAAGGGTGCTCCACCAG
Seq C2 exon
CGTGTCCCTGCCGCACCACAGGGACATCATCCGCAACTGTGCTGTCAGCGTGGACCAGATCCAGGACCTGCACTCCCCAATGTCACCCATCTCAGAGAACCCCACCTCACCCGCGTACAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.200 C2=0.465
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=47.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAATACATCCTGGACTCGT
R:
CTGTGCTGTACGCGGGTG
Band lengths:
247-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]