RnoEX6016479 @ rn6
Exon Skipping
Gene
ENSRNOG00000054560 | Sh2d3c
Description
SH2 domain containing 3C [Source:RGD Symbol;Acc:1307287]
Coordinates
chr3:11782749-11785251:+
Coord C1 exon
chr3:11782749-11782877
Coord A exon
chr3:11783957-11784411
Coord C2 exon
chr3:11785127-11785251
Length
455 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGTACCTTCTGTAGGTC
3' ss Score
10.13
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAGTACATTCTCGACTCCTCGCCAGAGAAGCTGCACAAGGAGCTGGAGGAAGAGCTGAAGCTCAGCAGTACAGACCTCCGCAGCCATGCCTGGTATCATGGACGTATCCCTCGTGAG
Seq A exon
GTCTCCGAGACCCTGGTGCAGCGGAACGGCGACTTCCTCATCCGTGACTCTCTCACCAGTCTGGGGGACTATGTGCTCACGTGCCGCTGGCACAATCAGACCTTGCACTTCAAGATCAACAAGGTGGTGGTGGAGGCTGGCGAGAGCTACACCCACATCCGGTACCTCTTCGAGCAGGAGAGCTTCGACCACGTGCCCGCCCTTGTGCGCTATCATGTGGGCAGCCGTAAGGCCGTGTCCGAACAGAGTGGGGCCATCATCTACTGCCCCGTCAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTACGGCCTGAGCCAGGGCAGCAGCAAGGCTGCCAGCCCAGCCAGCCCCTCAGGCCCCAAGGGCAGCCACATGAAAAGACGCAGCGTTACCATGACTGATGGGCTCACCTCTGACAAGGTCACCCGCGGAGATGGCTGCCCCAACAG
Seq C2 exon
CACCTCACTACCCCATCCTCGAGACTCCATCCGAAACTGCGCCCTCAGCATGGACCAGATCCCAGATCTACACTCTCCGCTGTCTCCTATCTCCGAGAGTCCCAGCTCCCCTGCCTATAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054560-'11-15,'11-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.283 C2=0.977
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=46.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACATTCTCGACTCCTCGC
R:
CTATAGGCAGGGGAGCTGGG
Band lengths:
238-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]