MmuEX6100607 @ mm10
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32744751-32747146:+
Coord C1 exon
chr2:32744751-32744879
Coord A exon
chr2:32745835-32746289
Coord C2 exon
chr2:32747022-32747146
Length
455 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCGTTCCTTCTGTAGGTC
3' ss Score
13.56
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAGTACATTCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTCCGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAG
Seq A exon
GTCTCTGAGACTCTGGTGCAGCGGAACGGCGACTTCCTCATCCGAGACTCACTCACCAGCCTAGGGGACTATGTGCTCACGTGCCGCTGGCACAATCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCCGGAGAGAGCTACACCCACATCCGGTACCTCTTCGAGCAGGAGAGCTTCGACCACGTGCCTGCCCTCGTGCGCTACCACGTGGGCAGCCGTAAGGCCGTGTCCGAACAGAGCGGGGCTATCATCTACTGCCCTGTCAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTATGGCCTGAGCCAGGGCAGCAGCAAGACTGCCAGCCCAGCCAGCCCCTCAGGCTCCAAGGGCAGCCACATGAAGAGGCGAAGCATTACCATGACTGATGGACTCACCACTGACAAGGTCACCCGCAGCGATGGCTGCCCCAACAG
Seq C2 exon
CACCTCATTACCCCATCCTCGAGACTCCATCCGAAACTGTGCCCTCAGCATGGACCAGATCCCAGATCTCCACTCACCCCTGTCTCCTATCTCCGAGAGCCCCAGCTCTCCTGCCTATAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013-'21-23,'21-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.283 C2=1.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=46.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACATTCTTGACTCCTCGCC
R:
CTATAGGCAGGAGAGCTGGGG
Band lengths:
238-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types