DreEX6087248 @ danRer10
Exon Skipping
Gene
ENSDARG00000028099 | sh2d3ca
Description
SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
Coordinates
chr10:10289616-10300891:+
Coord C1 exon
chr10:10289616-10289744
Coord A exon
chr10:10296313-10296740
Coord C2 exon
chr10:10300767-10300891
Length
428 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTCTCCAACACAGGCC
3' ss Score
8.54
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAGTACCTGCTGGAGTCTCCTCCAGAGAAACTCAGGAAGGAGCTGGAGGAGGAACTCAAACTCAGCAGCAGTGACATGAGGAGCCACGGCTGGTACCATGGCCATATTCCACGAGAG
Seq A exon
GCCTCTGAAACCTTGGTCCTACGCAGCGGCGACTTCCTAGTACGGGACTCCTTGTCAACAGTGGGCGACTATGTCCTGACCTGTCGCTGGCAGCAAGAAGTGATACACTGTCGGATCAGTAAAGTCCTGGTCAAAAGCGGACAAACTAAAATCCAGTACATGCTGGAGAATGAGAGCTTCGATTCTGTCCCCACGCTGGTAAGGCACCACGCTGGTACAGGTCGAGCAGTGTGTCCACGAACAGGAGCCCAGCTGCTGTGTCCGGTGAACCGAACGCTGCCACTGAGGTACCTGGAGGCCACGTTTGCTTTAGCTGGAGGAAGACCTGGATCTGCATATTCACCATCTGCCCAGAGGGGGGCGCATATCAAAAGACGCAGTGTTACTATGACAGATGGACTCACGACAGAGAAGATCATTCCTCACAG
Seq C2 exon
CCCTTCCACAGTGCACCATAAGGATGCCATGAGGAACTGTGCCATGAGTATGGATCAGATCCAAGAGTACCGCTGTCCACTGTCCCCTGTGGGGGAAACACCTCAATCCCCTGCCTACAGCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028099-'2-4,'2-1,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.262 C2=0.767
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(10.1=18.6)
A:
PF0001719=SH2=PD(87.3=48.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGAGAAGTACCTGCTGG
R:
CTGTAGGCAGGGGATTGAGGT
Band lengths:
246-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]