HsaEX6068025 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80752028-80752680:+
Coord C1 exon
chr12:80752028-80752129
Coord A exon
chr12:80752451-80752555
Coord C2 exon
chr12:80752640-80752680
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATGTAATTTTTCTTTTTAGTAT
3' ss Score
8.91
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
TTTGTGAATCTTGCACCAAACCTGTTCCACTATGTCATGATGGGGAATTTCTCACAGTAGATCTTAATAGCACACACTTCTGTTGTCCTCAGTATTACTGTG
Seq A exon
TATGTGAACCAAACCTTTGTCCTATGCCATTACTCAACTGTGCAGAAGATATGAATCTTGTGAAAGAAAATGTATCTGGTCAATGTTGCCCAACATGGCACTGTG
Seq C2 exon
AATGTAACTGTGAAAACCTTATTATGCCAACTTGTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATCTTGCACCAAACCTGT
R:
CACTTCACAAGTTGGCATAATAAGGT
Band lengths:
141-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)