BtaEX6019871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9940093-9947825:+
Coord C1 exon
chr5:9940093-9940194
Coord A exon
chr5:9941023-9941127
Coord C2 exon
chr5:9947647-9947825
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATGTTATTTTTTTAATTTAGTGT
3' ss Score
7.85
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
TGTGCAAACCTTGCACTGAACCTGTTCCACTGTGTACTGACGGAGAATTTCTCACTGTGGATCTTAATACTACACACTTCTGTTGTCCTCAGTATTACTGTG
Seq A exon
TGTGTGAGCCAAATCTTTGTCCTATGCCTCTATTCAACTGTGCAGAAGATATGAATCTTGTGAAAGAAAATGTATCTGGTCAATGTTGTCCAACATGGCATTGTG
Seq C2 exon
AAAAGGATGATGTGTGTGTATTTCAAGAAATATCAGTATTGAATCCTGGCCAATCTATGATAAGGTATTTGGAAGGGGATTTTTGTTACATGGTAGAGTGTCTCGAAGAAAAAGATAACCACACAGGCTTCCACACTTTGAACTTTACAATGGTGAATTGTTCAAAAGAATGTGATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'53-56,'53-52,54-56=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTTGCACTGAACCTGT
R:
AGTTCAAAGTGTGGAAGCCTGT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]