GgaEX6001397 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39767493-39769129:+
Coord C1 exon
chr1:39767493-39767594
Coord A exon
chr1:39768897-39769001
Coord C2 exon
chr1:39769089-39769129
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCCTCCCTATTTAGTTT
3' ss Score
10.07
5' ss Seq
GTGGTAATT
5' ss Score
5.8
Exon sequences
Seq C1 exon
TTTGTGAATCCTGCATTGAGCCTGTTCCCTTGTGTAATGAAGGGGAAATTCTCACCGTAGACCTTCACACCATACATTACTGTTGTCCTCATTACTATTGTG
Seq A exon
TTTGTGATGAAAATTTTTGTCCTGAGCCTCCTATGAATTGCACAGATGACATGATGGTTGTGAAGGAAAAAGTACCTGGGCAGTGTTGTCCAGAATGGCACTGTG
Seq C2 exon
AATGTAGTTGTGAAAATATTACTACAAGGACTTGCAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'55-57,'55-56,56-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGAATCCTGCATTGAGCCT
R:
TGCAAGTCCTTGTAGTAATATTTTCA
Band lengths:
138-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]