MmuEX6051187 @ mm10
Exon Skipping
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107777081-107777667:-
Coord C1 exon
chr10:107777566-107777667
Coord A exon
chr10:107777208-107777312
Coord C2 exon
chr10:107777081-107777121
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATTTGATTTTACTTCCTAGTTT
3' ss Score
6.48
5' ss Seq
GCGGTAACT
5' ss Score
6.77
Exon sequences
Seq C1 exon
TTTGTAAGACATGCACTGAACCAACTCCACAATGTACCGATGGGGAATTCCTCACTGTTAATATCAATACTACACATTTATGCTGTCCTCAGTACTACTGCG
Seq A exon
TTTGTGAGCCAGATCTTTGCCCTCCACCATCACTTGAGTGTGCAAAAGATATGAACCTGGTGAAAGAAAATGTATCTGGACAATGTTGCCCAAACTGGCGTTGCG
Seq C2 exon
AATGCAACTGTGAGACTCTTGTCATGCCAACCTGTGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'54-57,'54-56,55-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATGCACTGAACCAACTCC
R:
CACGTCACAGGTTGGCATGAC
Band lengths:
138-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types