RnoEX6031463 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51919793-51920467:+
Coord C1 exon
chr7:51919793-51919894
Coord A exon
chr7:51920235-51920339
Coord C2 exon
chr7:51920427-51920467
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATTTGATTTTGCTTCCTAGTTT
3' ss Score
6.74
5' ss Seq
GCGGTAAAC
5' ss Score
4.42
Exon sequences
Seq C1 exon
TTTGTAAGACATGCACTGAACTGACTCCACAATGTACTGATGGGGAATTCCTCACAGTGAATCTCAATACTACACATTTATGCTGTCCTCAGTACTACTGTG
Seq A exon
TTTGCGAGCCAGAACTTTGTCCCCCACCATTACTCGAGTGTGCAAAAGATATGAATCTGGTGAAAGAAAATGTATCCGGACAGTGTTGCCCAAACTGGCATTGCG
Seq C2 exon
AATGCAACTGTGAAAATCTTGTCACGCCAACTTGTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'57-63,'57-62,58-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATGCACTGAACTGACTCC
R:
CACTTCACAAGTTGGCGTGAC
Band lengths:
138-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]