GgaEX6001397 @ galGal3
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
NA
Coordinates
chr1:41719158-41720794:+
Coord C1 exon
chr1:41719158-41719259
Coord A exon
chr1:41720562-41720666
Coord C2 exon
chr1:41720754-41720794
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCCTCCCTATTTAGTTT
3' ss Score
10.07
5' ss Seq
GTGGTAATT
5' ss Score
5.8
Exon sequences
Seq C1 exon
TTTGTGAATCCTGCATTGAGCCTGTTCCCTTGTGTAATGAAGGGGAAATTCTCACCGTAGACCTTCACACCATACATTACTGTTGTCCTCATTACTATTGTG
Seq A exon
TTTGTGATGAAAATTTTTGTCCTGAGCCTCCTATGAATTGCACAGATGACATGATGGTTGTGAAGGAAAAAGTACCTGGGCAGTGTTGTCCAGAATGGCACTGTG
Seq C2 exon
AATGTAGTTGTGAAAATATTACTACAAGGACTTGCAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'57-63,'57-62,58-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGAATCCTGCATTGAGCCT
R:
TGCAAGTCCTTGTAGTAATATTTTCA
Band lengths:
138-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]