DreEX0052884 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6099072-6102106:+
Coord C1 exon
chr18:6099072-6099173
Coord A exon
chr18:6099278-6099382
Coord C2 exon
chr18:6102066-6102106
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTACTGTTTCAGTGT
3' ss Score
10.28
5' ss Seq
GCGGTACTG
5' ss Score
4.48
Exon sequences
Seq C1 exon
TGTGTGAGTCCTGCATTGAGCCCATACCAGTGTGTCAGACTGGAGAGATACTGGCTGTGGATATGAACACCACCAATCACTGCTGTCCACAGTATCATTGCG
Seq A exon
TGTGTGATATGAGTCTGTGTCCTGAGCCCAGTGTGAGTTGTGCTCCTGGAGCTGTGCTGATAAAGAGACCCGTGCCGGACAGCTGCTGTCCAGAAACACACTGCG
Seq C2 exon
AATGTCAGTGTCACAATCTTACGCTTCCGGCCTGCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAGTCCTGCATTGAGC
R:
CATGGTGCAGGCCGGAAG
Band lengths:
143-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]