Special

HsaEX6074808 @ hg19

Exon Skipping

Gene
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52563960-52567915:-
Coord C1 exon
chr15:52567759-52567915
Coord A exon
chr15:52564777-52564920
Coord C2 exon
chr15:52563960-52564041
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAGAGTCTTATTTTTTTTAGGCC
3' ss Score
5.84
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAACAACAGAAACCAGTCCATAATTGTAAGTGGGGAGTCAGGTGCTGGAAAGACAGTGTCGGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAATCGGGCAGCAACGCTCACGTGGAAGACAAGGTCCTGGCATCCAATCCCATCACCGAG
Seq A exon
GCCGTTGGAAATGCCAAGACCACCCGCAATGACAATAGTAGTCGGTTTGGGAAATACACAGAAATCAGTTTTGATGAACAAAATCAAATTATAGGAGCCAACATGAGCACTTACCTCCTGGAGAAATCCAGAGTTGTCTTTCAA
Seq C2 exon
TCGGAAAATGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCTGCACAGCAGTCGGAATTTAAACATCTTAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.071 A=0.286 C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(18.2=100)
A:
PF0006316=Myosin_head=FE(16.4=100)
C2:
PF0006316=Myosin_head=FE(10.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAGAAACCAGTCCATAATTGT
R:
TTTAAGATGTTTAAATTCCGACTGCT
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains