HsaEX6074808 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52563960-52567915:-
Coord C1 exon
chr15:52567759-52567915
Coord A exon
chr15:52564777-52564920
Coord C2 exon
chr15:52563960-52564041
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAGAGTCTTATTTTTTTTAGGCC
3' ss Score
5.84
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAACAACAGAAACCAGTCCATAATTGTAAGTGGGGAGTCAGGTGCTGGAAAGACAGTGTCGGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAATCGGGCAGCAACGCTCACGTGGAAGACAAGGTCCTGGCATCCAATCCCATCACCGAG
Seq A exon
GCCGTTGGAAATGCCAAGACCACCCGCAATGACAATAGTAGTCGGTTTGGGAAATACACAGAAATCAGTTTTGATGAACAAAATCAAATTATAGGAGCCAACATGAGCACTTACCTCCTGGAGAAATCCAGAGTTGTCTTTCAA
Seq C2 exon
TCGGAAAATGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCTGCACAGCAGTCGGAATTTAAACATCTTAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(18.2=100)
A:
PF0006316=Myosin_head=FE(16.4=100)
C2:
PF0006316=Myosin_head=FE(10.9=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAGAAACCAGTCCATAATTGT
R:
TTTAAGATGTTTAAATTCCGACTGCT
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)