GgaEX0006320 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8338932-8340720:+
Coord C1 exon
chr10:8338932-8339088
Coord A exon
chr10:8339629-8339772
Coord C2 exon
chr10:8340639-8340720
Length
144 bp
Sequences
Splice sites
3' ss Seq
GCAAGTTCATAATGTTGTAGGCT
3' ss Score
2.96
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAACGGCAAGAATCAGTCTATTATAGTCAGCGGAGAATCAGGAGCTGGAAAGACTGTGTCTGCAAGATACACTATGAGATACTTTGCCACCGTGAGTAAGTCGAGCAGCAATGCACACGTGGAGGATAAAGTTCTGGCATCCAATCCAATCACTGAG
Seq A exon
GCTGTTGGCAATGCAAAGACCACGCGGAATGATAACAGCAGTCGGTTTGGAAAATACACTGAAATCAGCTTTGATCAGAGGTATCGAATCATTGGAGCCAACATGAGAACGTATCTGCTTGAGAAATCCAGAGTTGTCTTCCAG
Seq C2 exon
TCAGAGAATGAGAGGAATTACCATATATTTTATCAGCTGTGTGCATCTGCTATGCAGCCTGAATTCAAGCATCTTAAGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'8-5,'8-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCAAGAATCAGTCTATTATAGT
R:
CCAACTTAAGATGCTTGAATTCAGG
Band lengths:
237-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]