DreEX6100646 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4666066-4666629:+
Coord C1 exon
chr25:4666066-4666222
Coord A exon
chr25:4666330-4666473
Coord C2 exon
chr25:4666548-4666629
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATAATCGAATGCGCCTGCAGGCC
3' ss Score
6
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAATAACAAAAATCAGTCCATCATTGTGAGCGGTGAGTCCGGGGCCGGAAAGACTGTATCTGCTCGCTATGCTATGAGATACTTTGCCATGGTCAGCAAATCCGGCAGCAAAACCCGAGTGGAGGACAAAGTTTTGGCGTCCAATCCGATCACTGAG
Seq A exon
GCCATTGGAAATGCAAAAACAACCCGAAATGACAACAGCAGTCGATTTGGAAAGTACACTGAGATCAGTTTCGATAAAAGATACCAAATCATTGGTGCCAACATGAGGACGTATCTTCTGGAAAAGTCCAGGGTGGTGTTTCAG
Seq C2 exon
TCGGAGAACGAGAGAAATTATCACATCTTCTACCAAATGTGTGCTTGTGCAAATCAGCCGGAGTTCAAAGGCTTACGACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(42.7=95.3)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAATCAGTCCATCATTGTGAGC
R:
ACAGTCGTAAGCCTTTGAACTCC
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]