MmuEX6067285 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75249733-75250704:+
Coord C1 exon
chr9:75249733-75249889
Coord A exon
chr9:75250373-75250516
Coord C2 exon
chr9:75250590-75250704
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGAACCTTGTGTGTTCTAGGCT
3' ss Score
9.41
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACAATAGAAATCAGTCCATAATCGTGAGTGGAGAATCAGGAGCCGGGAAGACTGTCTCTGCACGCTATGCCATGAGGTACTTCGCTACCGTCAGCAAATCGAGCAGCAATGCCCATGTGGAGGACAAAGTCTTGGCATCCAATCCCATAACTGAG
Seq A exon
GCTGTTGGAAATGCCAAGACCACCCGCAATGACAACAGCAGTCGGTTTGGGAAATACACAGAGATCAGCTTTGATGAGAGAAACCAGATCATTGGCGCCAATATGAGAACTTACCTCCTGGAGAAGTCCAGAGTTGTCTTTCAG
Seq C2 exon
GTCATGAGTTCAATTCCCAGCACCTCGTGGTGGCTCACAACTATCTGTGGTGAGATCTGATGCCCTCTTCTAGTGTGCCTGAAGAGAACAACAGCGTACTCACATACATACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'1-19,'1-8,12-19=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.280 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(28.0=100)
A:
PF0006316=Myosin_head=FE(25.3=100)
C2:
PF0006316=Myosin_head=PD(1.6=15.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCCATAATCGTGAGTGGAGA
R:
ACGCTGTTGTTCTCTTCAGGC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types