RnoEX6036566 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82189292-82193020:+
Coord C1 exon
chr8:82189292-82189448
Coord A exon
chr8:82191897-82192040
Coord C2 exon
chr8:82192939-82193020
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGAGCCCTGTGTGTTCTAGGCT
3' ss Score
9.13
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAACAATAGGAATCAGTCCATAATCGTGAGTGGGGAATCTGGAGCCGGGAAGACTGTCTCTGCAAGATACGCCATGAGGTACTTTGCCACCGTCAGCAAGTCCAGCAGTAACGCCCATGTGGAGGAAAAAGTCCTGGCATCCAATCCCATCACTGAG
Seq A exon
GCTGTTGGAAATGCCAAGACCACTCGCAATGACAACAGCAGTCGGTTTGGGAAGTACACGGAAATCAGCTTTGATGAGAGAAACCAGATCATCGGCGCCAATATGAGAACCTACCTCCTGGAGAAGTCCAGAGTTGTCTTTCAG
Seq C2 exon
TCAGAAAATGAACGGAATTACCACATCTTCTACCAGCTTTGTGCATCCGCACAGCAGTCAGAATTTAAACACCTTAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(24.0=100)
A:
PF0006316=Myosin_head=FE(21.7=100)
C2:
PF0006316=Myosin_head=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCATAATCGTGAGTGGGG
R:
CCAGTTTAAGGTGTTTAAATTCTGAC
Band lengths:
226-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]