MmuEX6067285 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75097540-75099329:+
Coord C1 exon
chr9:75097540-75097696
Coord A exon
chr9:75098180-75098323
Coord C2 exon
chr9:75099248-75099329
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGAACCTTGTGTGTTCTAGGCT
3' ss Score
9.41
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACAATAGAAATCAGTCCATAATCGTGAGTGGAGAATCAGGAGCCGGGAAGACTGTCTCTGCACGCTATGCCATGAGGTACTTCGCTACCGTCAGCAAATCGAGCAGCAATGCCCATGTGGAGGACAAAGTCTTGGCATCCAATCCCATAACTGAG
Seq A exon
GCTGTTGGAAATGCCAAGACCACCCGCAATGACAACAGCAGTCGGTTTGGGAAATACACAGAGATCAGCTTTGATGAGAGAAACCAGATCATTGGCGCCAATATGAGAACTTACCTCCTGGAGAAGTCCAGAGTTGTCTTTCAG
Seq C2 exon
TCAGAAAATGAACGGAATTACCACATCTTCTACCAGCTTTGTGCATCCGCACAGCAGTCAGAATTTAAACACCTTAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.292 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAGAAATCAGTCCATAATCGTG
R:
GTTTAAGGTGTTTAAATTCTGACTGC
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: